Home
Escherichia coli
Saccharomyces cerevisiae
Homo sapiens
Upload sequence
Escherichia coli
Saccharomyces cerevisiae
Homo sapiens
With codon elongation times [ms]
Download
HOW TO
- search and browse the database
- run simulation
- upload sequence
- mirror this server
- cite
Transimulation
PROTEIN BIOSYNTHESIS SERVER
Saccharomyces cerevisiae
Share
Back
Gene Id:
YDL078C
Other IDs:
MDH3; SGDID:S000002236
Gene Description:
Peroxisomal malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the glyoxylate cycl; Verified ORF.
ORF length [codons] - L:
344
transcripts per cell - x:
9.86
number of proteins produced from a single transcript during its lifespan - b:
85.95
ribosome density in number of ribosomes per 100 codons - g:
0.923
number of ribosomes attached to a single transcript - w:
3.17
translation initiation time [s] - I:
23.20
translation elongation time [s] - E:
73.50
mean codon elongation time [ms] - ē:
214.00
transcript mean lifetime [hh:mm:ss] - m:
0:33:10
View ribosome speed plots
for the original sequence
Include delays at 6 position